Transcript: ENST00000330339.7 RPS17-001

Description

ribosomal protein S17 [Source:HGNC Symbol;Acc:10397]

Gene Synonyms

DBA4, MGC72007, RPS17L, RPS17L1, RPS17L2, S17

Location

Chromosome 15: 82,821,158-82,824,972 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 7 domains and features, is associated with 1815 variant alleles and maps to 679 oligo probes.

Gene

This transcript is a product of gene ENSG00000184779.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000559187.1	RPS17-005	1909	136aa	ENSP00000453564.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YN88	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000330339.7	RPS17-001	595	135aa	ENSP00000346045.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10320	P08708	NM_001021.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000560826.1	RPS17-007	581	191aa	ENSP00000452655.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YK46	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000560977.1	RPS17-008	522	59aa	ENSP00000452696.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000560084.1	RPS17-004	1922	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000559636.1	RPS17-003	1877	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000560652.1	RPS17-009	932	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000559854.1	RPS17-010	760	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000560151.1	RPS17-002	759	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000560024.1	RPS17-006	557	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 595 bps, Translation length: 135 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P08708

CCDS

This transcript is a member of the Human CCDS set: CCDS10320

Version

ENST00000330339.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000303999 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000330339.7 RPS17-001

Summary