Transcript: ENST00000329078.3 SPNS2-001

Description

spinster homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:26992]

Location

Chromosome 17: 4,402,133-4,442,330 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 22 domains and features, is associated with 21881 variant alleles and maps to 459 oligo probes.

Gene

This transcript is a product of gene ENSG00000183018.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000329078.3	SPNS2-001	3447	549aa	ENSP00000333292.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42237	Q8IVW8	NM_001124758.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000571386.1	SPNS2-003	846	282aa	ENSP00000461410.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L4N9	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000570979.1	SPNS2-002	1768	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000576635.2	SPNS2-004	901	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000573106.1	SPNS2-006	828	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000570641.1	SPNS2-008	783	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000573990.1	SPNS2-007	761	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000571668.1	SPNS2-005	704	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 12, Transcript length: 3,447 bps, Translation length: 549 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8IVW8

CCDS

This transcript is a member of the Human CCDS set: CCDS42237

Version

ENST00000329078.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000438802 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000329078.3 SPNS2-001

Summary