Human (GRCh37.p13)
Description

calpain 12 [Source:HGNC Symbol;Acc:13249]

Location
About this transcript

This transcript has 6 exons, is annotated with 2 domains and features, is associated with 3508 variant alleles and maps to 259 oligo probes.

Gene
Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeqFlags
ENST00000328867.4CAPN12-0012762719aaENSP00000331636.3
 
Protein coding
CCDS12519M0R3D7 Q6ZSI9 NM_144691.3GENCODE basic
ENST00000601953.1CAPN12-0022381570aaENSP00000473156.1
 
Protein coding
M0R3D7 -GENCODE basic
ENST00000597987.1CAPN12-011896105aaENSP00000470760.1
 
Protein coding
M0QZT6 -CDS 5' incomplete
ENST00000598684.1CAPN12-006546179aaENSP00000470233.1
 
Protein coding
M0QZ20 -CDS 3' incomplete
ENST00000595177.1CAPN12-010488104aaENSP00000471007.1
 
Protein coding
--CDS 5' incomplete
ENST00000594552.1CAPN12-005104636aaENSP00000469217.1
 
Nonsense mediated decay
--CDS 5' incomplete
ENST00000597740.1CAPN12-00754793aaENSP00000471510.1
 
Nonsense mediated decay
M0R0X4 --
ENST00000601685.1CAPN12-0122552No protein-
 
Retained intron
---
ENST00000597716.1CAPN12-0032198No protein-
 
Retained intron
---
ENST00000593700.1CAPN12-0041118No protein-
 
Retained intron
---
ENST00000594497.1CAPN12-008526No protein-
 
Retained intron
---
ENST00000597354.1CAPN12-009519No protein-
 
Retained intron
---
Statistics

Exons: 6, Coding exons: 3, Transcript length: 1,046 bps, Translation length: 36 residues

Incomplete CDS

CDS 5' incomplete

Version

ENST00000594552.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Stop codons

This transcript has a variant, rs4801861, that causes a stop codon to be lost in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HAPMAP-GIH, CSHL-HAPMAP:HAPMAP-LWK, ESP6500:European_American, CSHL-HAPMAP:HAPMAP-MEX, CSHL-HAPMAP:HapMap-YRI, ESP6500:African_American, CSHL-HAPMAP:HAPMAP-CHD, CSHL-HAPMAP:HAPMAP-MKK, CSHL-HAPMAP:HapMap-JPT, CSHL-HAPMAP:HAPMAP-TSI, CSHL-HAPMAP:HapMap-CEU, CSHL-HAPMAP:HAPMAP-CHB, CSHL-HAPMAP:HAPMAP-ASW, CSHL-HAPMAP:HapMap-HCB.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
OTTHUMT00000462146 (version 1)