Transcript: ENST00000328867.4 CAPN12-001

Description

calpain 12 [Source:HGNC Symbol;Acc:13249]

Location

Chromosome 19: 39,221,199-39,235,114 reverse strand.

About this transcript

This transcript has 21 exons, is annotated with 28 domains and features, is associated with 10148 variant alleles and maps to 487 oligo probes.

Gene

This transcript is a product of gene ENSG00000182472.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000328867.4	CAPN12-001	2762	719aa	ENSP00000331636.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12519	M0R3D7 Q6ZSI9	NM_144691.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000601953.1	CAPN12-002	2381	570aa	ENSP00000473156.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R3D7	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000597987.1	CAPN12-011	896	105aa	ENSP00000470760.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QZT6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000598684.1	CAPN12-006	546	179aa	ENSP00000470233.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QZ20	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000595177.1	CAPN12-010	488	104aa	ENSP00000471007.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000594552.1	CAPN12-005	1046	36aa	ENSP00000469217.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000597740.1	CAPN12-007	547	93aa	ENSP00000471510.1	Nonsense mediated decay		M0R0X4	-	-
ENST00000601685.1	CAPN12-012	2552	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000597716.1	CAPN12-003	2198	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000593700.1	CAPN12-004	1118	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000594497.1	CAPN12-008	526	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000597354.1	CAPN12-009	519	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 21, Coding exons: 21, Transcript length: 2,762 bps, Translation length: 719 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6ZSI9

CCDS

This transcript is a member of the Human CCDS set: CCDS12519

Version

ENST00000328867.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000462151 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000328867.4 CAPN12-001

Summary