Transcript: ENST00000322038.5 TSHZ1-001

Description

teashirt zinc finger homeobox 1 [Source:HGNC Symbol;Acc:10669]

Gene Synonyms

CAA, NY-CO-33, SDCCAG33, TSH1

Location

About this transcript

This transcript has 2 exons, is annotated with 22 domains and features, is associated with 34775 variant alleles and maps to 300 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000322038.5	TSHZ1-001	4992	1032aa	ENSP00000323584.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12009	A7YF73 H0YKA1 H0YN23 Q6ZSZ6	NM_005786.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000580243.1	TSHZ1-005	3582	1077aa	ENSP00000464391.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A7YF73 H0YKA1 H0YN23 Q6ZSZ6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000560918.2	TSHZ1-002	1022	276aa	ENSP00000453834.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YKA1 H0YN23	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000560661.1	TSHZ1-003	551	78aa	ENSP00000452718.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YKA1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000584217.1	TSHZ1-004	7080	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 4,992 bps, Translation length: 1,032 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6ZSZ6

CCDS

This transcript is a member of the Human CCDS set: CCDS12009

Version

ENST00000322038.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000256333 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.