Transcript: ENST00000581161.1 RTTN-003

Description

rotatin [Source:HGNC Symbol;Acc:18654]

Gene Synonyms

DKFZP434G145

Location

Chromosome 18: 67,671,205-67,872,936 reverse strand.

About this transcript

This transcript has 48 exons, is annotated with 9 domains and features, is associated with 84592 variant alleles and maps to 1091 oligo probes.

Gene

This transcript is a product of gene ENSG00000176225.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000255674.6	RTTN-001	7326	2226aa	ENSP00000255674.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42443	Q86VV8	NM_173630.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000454359.1	RTTN-202	7002	879aa	ENSP00000402352.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KT00 Q86VV8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000437017.1	RTTN-201	4850	1593aa	ENSP00000399520.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JTR3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000578780.1	RTTN-006	911	184aa	ENSP00000462675.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000581161.1	RTTN-003	6722	500aa	ENSP00000462926.1	Nonsense mediated decay		J3KTD2	-	-
ENST00000583043.1	RTTN-004	6278	669aa	ENSP00000462733.1	Nonsense mediated decay		J3KT00	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000579986.1	RTTN-009	801	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000583765.1	RTTN-010	783	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000584659.1	RTTN-007	683	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000579021.1	RTTN-012	669	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000581709.1	RTTN-008	572	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000581583.1	RTTN-002	2355	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000580034.1	RTTN-011	825	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 48, Coding exons: 12, Transcript length: 6,722 bps, Translation length: 500 residues

Version

ENST00000581161.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000442992 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000581161.1 RTTN-003

Summary