Transcript: ENST00000255674.6 RTTN-001

Description

rotatin [Source:HGNC Symbol;Acc:18654]

Gene Synonyms

DKFZP434G145

Location

Chromosome 18: 67,671,029-67,873,181 reverse strand.

About this transcript

This transcript has 49 exons, is annotated with 24 domains and features, is associated with 84837 variant alleles and maps to 1287 oligo probes.

Gene

This transcript is a product of gene ENSG00000176225.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000255674.6	RTTN-001	7326	2226aa	ENSP00000255674.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42443	Q86VV8	NM_173630.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000454359.1	RTTN-202	7002	879aa	ENSP00000402352.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KT00 Q86VV8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000437017.1	RTTN-201	4850	1593aa	ENSP00000399520.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JTR3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000578780.1	RTTN-006	911	184aa	ENSP00000462675.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000581161.1	RTTN-003	6722	500aa	ENSP00000462926.1	Nonsense mediated decay		J3KTD2	-	-
ENST00000583043.1	RTTN-004	6278	669aa	ENSP00000462733.1	Nonsense mediated decay		J3KT00	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000579986.1	RTTN-009	801	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000583765.1	RTTN-010	783	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000584659.1	RTTN-007	683	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000579021.1	RTTN-012	669	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000581709.1	RTTN-008	572	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000581583.1	RTTN-002	2355	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000580034.1	RTTN-011	825	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 49, Coding exons: 49, Transcript length: 7,326 bps, Translation length: 2,226 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q86VV8

CCDS

This transcript is a member of the Human CCDS set: CCDS42443

Version

ENST00000255674.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000442988 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000255674.6 RTTN-001

Summary