Transcript: ENST00000311895.7 ERCC4-001

Description

excision repair cross-complementing rodent repair deficiency, complementation group 4 [Source:HGNC Symbol;Acc:3436]

Gene Synonyms

ERCC11, FANCQ, RAD1, XPF

Location

Chromosome 16: 14,014,014-14,046,202 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 12 domains and features, is associated with 15469 variant alleles and maps to 697 oligo probes.

Gene

This transcript is a product of gene ENSG00000175595.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000311895.7	ERCC4-001	6758	916aa	ENSP00000310520.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32390	B4DXD8 Q92889	NM_005236.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000575156.1	ERCC4-003	2073	372aa	ENSP00000459933.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A5PKV6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000462862.1	ERCC4-002	721	35aa	ENSP00000461322.1	Nonsense mediated decay		I3L4K0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000574194.1	ERCC4-007	583	75aa	ENSP00000461883.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000574781.1	ERCC4-006	638	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000389138.3	ERCC4-004	2106	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000576348.1	ERCC4-005	604	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000573018.1	ERCC4-008	523	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 6,758 bps, Translation length: 916 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q92889

CCDS

This transcript is a member of the Human CCDS set: CCDS32390

Version

ENST00000311895.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000109634 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000311895.7 ERCC4-001

Summary