Transcript: ENST00000325656.5 CABP4-001

Description

calcium binding protein 4 [Source:HGNC Symbol;Acc:1386]

Gene Synonyms

CSNB2B

Location

About this transcript

This transcript has 6 exons, is annotated with 18 domains and features, is associated with 2147 variant alleles and maps to 326 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000438189.2	CABP4-002	1426	170aa	ENSP00000401555.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P57796	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000325656.5	CABP4-001	1299	275aa	ENSP00000324960.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8166	P57796	NM_145200.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545777.1	CABP4-006	682	128aa	ENSP00000439145.1	Nonsense mediated decay		F5H3E8	-	-
ENST00000542025.2	CABP4-005	764	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000538060.1	CABP4-004	561	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000542233.1	CABP4-007	353	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000545040.1	CABP4-003	914	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 1,299 bps, Translation length: 275 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P57796

CCDS

This transcript is a member of the Human CCDS set: CCDS8166

Version

ENST00000325656.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000397624 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.