Transcript: ENST00000526995.1 TRAF6-001

Description

TNF receptor-associated factor 6, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:12036]

Gene Synonyms

MGC:3310, RNF85

Location

About this transcript

This transcript has 7 exons, is annotated with 23 domains and features, is associated with 10623 variant alleles and maps to 516 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000526995.1	TRAF6-001	4627	522aa	ENSP00000433623.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7901	Q9Y4K3	NM_004620.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000348124.5	TRAF6-002	2558	522aa	ENSP00000337853.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7901	Q9Y4K3	NM_145803.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000529150.1	TRAF6-003	575	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 4,627 bps, Translation length: 522 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y4K3

CCDS

This transcript is a member of the Human CCDS set: CCDS7901

Version

ENST00000526995.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000389530 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.