Transcript: ENST00000566637.1 CTU2-005

Description

cytosolic thiouridylase subunit 2 homolog (S. pombe) [Source:HGNC Symbol;Acc:28005]

Gene Synonyms

C16orf84, NCS2, UPF0432

Location

Chromosome 16: 88,776,367-88,781,794 forward strand.

About this transcript

This transcript has 12 exons, is associated with 5500 variant alleles and maps to 353 oligo probes.

Gene

This transcript is a product of gene ENSG00000174177.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000567949.1	CTU2-004	1905	586aa	ENSP00000456908.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BSW6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000453996.2	CTU2-001	1751	515aa	ENSP00000388320.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45545	B4DS10 H3BNU5 Q2VPK5	NM_001012759.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000312060.5	CTU2-002	1672	485aa	ENSP00000308617.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32506	B4DS10 H3BNU5 Q2VPK5	NM_001012762.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378384.3	CTU2-201	1586	428aa	ENSP00000367635.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q2VPK5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000564921.1	CTU2-009	931	89aa	ENSP00000455010.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BNU5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000567316.1	CTU2-006	452	108aa	ENSP00000455305.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BPG4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000564105.1	CTU2-003	1586	69aa	ENSP00000454923.1	Nonsense mediated decay		H3BNM3	-	-
ENST00000566637.1	CTU2-005	1619	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000564584.1	CTU2-008	896	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000565071.1	CTU2-010	894	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000562011.1	CTU2-007	324	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 0, Transcript length: 1,619 bps,

Version

ENST00000566637.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000423029 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000566637.1 CTU2-005

Summary