Transcript: ENST00000312060.5 CTU2-002

Description

cytosolic thiouridylase subunit 2 homolog (S. pombe) [Source:HGNC Symbol;Acc:28005]

Gene Synonyms

C16orf84, NCS2, UPF0432

Location

Chromosome 16: 88,772,891-88,781,794 forward strand.

About this transcript

This transcript has 14 exons, is annotated with 10 domains and features, is associated with 8098 variant alleles and maps to 370 oligo probes.

Gene

This transcript is a product of gene ENSG00000174177.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000567949.1	CTU2-004	1905	586aa	ENSP00000456908.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BSW6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000453996.2	CTU2-001	1751	515aa	ENSP00000388320.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45545	B4DS10 H3BNU5 Q2VPK5	NM_001012759.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000312060.5	CTU2-002	1672	485aa	ENSP00000308617.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32506	B4DS10 H3BNU5 Q2VPK5	NM_001012762.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378384.3	CTU2-201	1586	428aa	ENSP00000367635.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q2VPK5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000564921.1	CTU2-009	931	89aa	ENSP00000455010.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BNU5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000567316.1	CTU2-006	452	108aa	ENSP00000455305.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BPG4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000564105.1	CTU2-003	1586	69aa	ENSP00000454923.1	Nonsense mediated decay		H3BNM3	-	-
ENST00000566637.1	CTU2-005	1619	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000564584.1	CTU2-008	896	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000565071.1	CTU2-010	894	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000562011.1	CTU2-007	324	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 14, Transcript length: 1,672 bps, Translation length: 485 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q2VPK5

CCDS

This transcript is a member of the Human CCDS set: CCDS32506

Version

ENST00000312060.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000423027 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000312060.5 CTU2-002

Summary