Transcript: ENST00000396659.3 GATM-001

Description

glycine amidinotransferase (L-arginine:glycine amidinotransferase) [Source:HGNC Symbol;Acc:4175]

Gene Synonyms

AGAT, AT, CCDS3

Location

Chromosome 15: 45,653,322-45,670,991 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 6 domains and features, is associated with 7105 variant alleles and maps to 531 oligo probes.

Gene

This transcript is a product of gene ENSG00000171766.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000396659.3	GATM-001	2597	423aa	ENSP00000379895.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10122	H0YKW9 H0YLC6 H0YN43 P50440	NM_001482.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000558336.1	GATM-002	1522	391aa	ENSP00000454008.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YKW9 H0YLC6 H0YN43 P50440	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000561148.1	GATM-008	903	31aa	ENSP00000453860.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YN43	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000559885.1	GATM-007	579	15aa	ENSP00000453087.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000558163.1	GATM-004	569	167aa	ENSP00000453781.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YLC6 H0YMX4 H0YN43	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000558537.1	GATM-006	493	32aa	ENSP00000453151.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YLC6 H0YN43	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000558118.1	GATM-005	554	96aa	ENSP00000452971.1	Nonsense mediated decay		H0YKW9	-	-
ENST00000458245.5	GATM-012	1107	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000527933.2	GATM-013	572	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000560538.1	GATM-009	549	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000558362.1	GATM-003	3911	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000558916.1	GATM-010	913	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000561376.1	GATM-011	562	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 2,597 bps, Translation length: 423 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P50440

CCDS

This transcript is a member of the Human CCDS set: CCDS10122

Version

ENST00000396659.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000254220 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000396659.3 GATM-001

Summary