Transcript: ENST00000531624.1 SPATA5L1-004

Description

spermatogenesis associated 5-like 1 [Source:HGNC Symbol;Acc:28762]

Gene Synonyms

FLJ12286, MGC5347

Location

Chromosome 15: 45,702,571-45,713,576 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 7 domains and features, is associated with 4865 variant alleles and maps to 294 oligo probes.

Gene

This transcript is a product of gene ENSG00000171763.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000305560.6	SPATA5L1-001	2570	753aa	ENSP00000305494.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10123	Q9BVQ7	NM_024063.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000559860.1	SPATA5L1-007	2023	620aa	ENSP00000453406.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9BVQ7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000531624.1	SPATA5L1-004	944	258aa	ENSP00000431242.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000531970.1	SPATA5L1-002	2464	620aa	ENSP00000436823.1	Nonsense mediated decay		Q9BVQ7	-	-
ENST00000525552.1	SPATA5L1-003	362	19aa	ENSP00000453091.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000533841.1	SPATA5L1-006	521	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000533199.1	SPATA5L1-005	583	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 944 bps, Translation length: 258 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000531624.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000387873 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000531624.1 SPATA5L1-004

Summary