Transcript: ENST00000305560.6 SPATA5L1-001

Description

spermatogenesis associated 5-like 1 [Source:HGNC Symbol;Acc:28762]

Gene Synonyms

FLJ12286, MGC5347

Location

Chromosome 15: 45,694,529-45,713,617 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 17 domains and features, is associated with 8843 variant alleles and maps to 478 oligo probes.

Gene

This transcript is a product of gene ENSG00000171763.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000305560.6	SPATA5L1-001	2570	753aa	ENSP00000305494.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10123	Q9BVQ7	NM_024063.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000559860.1	SPATA5L1-007	2023	620aa	ENSP00000453406.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9BVQ7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000531624.1	SPATA5L1-004	944	258aa	ENSP00000431242.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000531970.1	SPATA5L1-002	2464	620aa	ENSP00000436823.1	Nonsense mediated decay		Q9BVQ7	-	-
ENST00000525552.1	SPATA5L1-003	362	19aa	ENSP00000453091.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000533841.1	SPATA5L1-006	521	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000533199.1	SPATA5L1-005	583	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 2,570 bps, Translation length: 753 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9BVQ7

CCDS

This transcript is a member of the Human CCDS set: CCDS10123

Version

ENST00000305560.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000254218 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000305560.6 SPATA5L1-001

Summary