Transcript: ENST00000306726.2 PTPN9-001

Description

protein tyrosine phosphatase, non-receptor type 9 [Source:HGNC Symbol;Acc:9661]

Gene Synonyms

MEG2, PTPMEG2

Location

About this transcript

This transcript has 13 exons, is annotated with 24 domains and features, is associated with 50878 variant alleles and maps to 602 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000306726.2	PTPN9-001	3943	593aa	ENSP00000303554.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10280	P43378	NM_002833.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000561731.1	PTPN9-004	545	174aa	ENSP00000455934.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BQT6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000564970.1	PTPN9-005	726	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000563835.1	PTPN9-002	338	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000568108.1	PTPN9-003	561	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 3,943 bps, Translation length: 593 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P43378

CCDS

This transcript is a member of the Human CCDS set: CCDS10280

Version

ENST00000306726.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000286474 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.