Transcript: ENST00000498094.1 TNXB-004

Description

tenascin XB [Source:HGNC Symbol;Acc:11976]

Gene Synonyms

EDS3, HXBL, TENX, TN-X, TNX, TNXB1, TNXB2, TNXBS, XB, XBS

Location

Chromosome 6: 32,010,043-32,011,229 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 539 variant alleles and maps to 1367 oligo probes.

Gene

This transcript is a product of gene ENSG00000168477.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000375244.3	TNXB-001	13132	4244aa	ENSP00000364393.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B6RHJ5 E7EPZ9 Q9NPK7 Q9NPK8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000375247.2	TNXB-201	13125	4242aa	ENSP00000364396.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B6RHJ5 P22105 Q9NPK7 Q9NPK8	NM_019105.6	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000451343.1	TNXB-006	3125	673aa	ENSP00000407685.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4736	B6RHJ5 P22105	NM_032470.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000479795.1	TNXB-007	2742	842aa	ENSP00000418248.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J7W4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000442721.1	TNXB-003	372	7aa	ENSP00000389946.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000490077.1	TNXB-005	2756	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000486148.1	TNXB-002	2669	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000498094.1	TNXB-004	792	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 792 bps,

Version

ENST00000498094.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000268933 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000498094.1 TNXB-004

Summary