Transcript: ENST00000559842.1 PRTG-003

Description

protogenin [Source:HGNC Symbol;Acc:26373]

Gene Synonyms

FLJ25756, IGDCC5

Location

About this transcript

This transcript has 2 exons, is associated with 836 variant alleles and maps to 54 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000389286.4	PRTG-001	11967	1150aa	ENSP00000373937.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42040	H0YKD6 Q2VWP7	NM_173814.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000561465.1	PRTG-002	1925	218aa	ENSP00000453160.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YLD1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000561292.1	PRTG-004	833	137aa	ENSP00000453335.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YKD6 H0YLT7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000558349.1	PRTG-005	576	22aa	ENSP00000452760.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YKD6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000559842.1	PRTG-003	577	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 577 bps,

Version

ENST00000559842.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000419359 (version 1)