Transcript: ENST00000389286.4 PRTG-001

Description

protogenin [Source:HGNC Symbol;Acc:26373]

Gene Synonyms

FLJ25756, IGDCC5

Location

About this transcript

This transcript has 20 exons, is annotated with 59 domains and features, is associated with 62276 variant alleles and maps to 720 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000389286.4	PRTG-001	11967	1150aa	ENSP00000373937.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42040	H0YKD6 Q2VWP7	NM_173814.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000561465.1	PRTG-002	1925	218aa	ENSP00000453160.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YLD1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000561292.1	PRTG-004	833	137aa	ENSP00000453335.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YKD6 H0YLT7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000558349.1	PRTG-005	576	22aa	ENSP00000452760.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YKD6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000559842.1	PRTG-003	577	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 20, Coding exons: 20, Transcript length: 11,967 bps, Translation length: 1,150 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q2VWP7

CCDS

This transcript is a member of the Human CCDS set: CCDS42040

Version

ENST00000389286.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000419357 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.