Transcript: ENST00000538754.1 SALL2-005

Description

spalt-like transcription factor 2 [Source:HGNC Symbol;Acc:10526]

Gene Synonyms

HSAL2, Hsal2, KIAA0360, SAL2, Sal-2, ZNF795, p150(Sal2)

Location

Chromosome 14: 21,989,673-21,994,634 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 3 domains and features, is associated with 3061 variant alleles and maps to 288 oligo probes.

Gene

This transcript is a product of gene ENSG00000165821.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000327430.3	SALL2-001	4925	1007aa	ENSP00000333537.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32045	F5H1G6 Q9Y467	NM_005407.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000450879.2	SALL2-006	3178	906aa	ENSP00000396773.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EW59	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000546363.1	SALL2-004	3094	902aa	ENSP00000440054.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000317492.5	SALL2-003	1549	200aa	ENSP00000320536.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GY43	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000538754.1	SALL2-005	1464	198aa	ENSP00000445916.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8N656	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000537235.1	SALL2-008	659	191aa	ENSP00000438493.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H1G6 F5H433	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000541965.1	SALL2-009	553	99aa	ENSP00000439654.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H1G6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 1,464 bps, Translation length: 198 residues

Version

ENST00000538754.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000401244 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000538754.1 SALL2-005

Summary