Transcript: ENST00000298530.3 TMEM52B-001

Description

transmembrane protein 52B [Source:HGNC Symbol;Acc:26438]

Gene Synonyms

C12orf59, FLJ31166

Location

Chromosome 12: 10,331,612-10,344,400 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 4 domains and features, is associated with 6364 variant alleles and maps to 310 oligo probes.

Gene

This transcript is a product of gene ENSG00000165685.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000298530.3	TMEM52B-001	2731	163aa	ENSP00000298530.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8619	Q4KMG9	NM_153022.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381923.2	TMEM52B-002	2601	183aa	ENSP00000371348.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS66314	F5H230 Q4KMG9	NM_001079815.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000536952.1	TMEM52B-201	1456	183aa	ENSP00000446102.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS66314	F5H230 Q4KMG9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543484.1	TMEM52B-005	542	90aa	ENSP00000445582.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H230	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000545924.1	TMEM52B-004	364	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000334148.7	TMEM52B-003	362	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000546153.1	TMEM52B-006	561	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 2,731 bps, Translation length: 163 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q4KMG9

CCDS

This transcript is a member of the Human CCDS set: CCDS8619

Version

ENST00000298530.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000399648 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000298530.3 TMEM52B-001

Summary