Transcript: ENST00000297405.5 CSMD3-001

Description

CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:19291]

Gene Synonyms

KIAA1894

Location

Chromosome 8: 113,235,157-114,449,328 reverse strand.

About this transcript

This transcript has 71 exons, is annotated with 220 domains and features, is associated with 588247 variant alleles and maps to 1485 oligo probes.

Gene

This transcript is a product of gene ENSG00000164796.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000297405.5	CSMD3-001	13212	3707aa	ENSP00000297405.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6315	Q7Z407	NM_198123.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000343508.3	CSMD3-006	13018	3667aa	ENSP00000345799.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6317	Q7Z407	NM_198124.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000352409.3	CSMD3-201	12912	3637aa	ENSP00000343124.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BXX0 Q7Z407	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000455883.2	CSMD3-002	12485	3538aa	ENSP00000412263.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6316	Q7Z407	NM_052900.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000339701.3	CSMD3-007	10773	2977aa	ENSP00000341558.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BXX0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000519485.1	CSMD3-010	452	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000493303.1	CSMD3-005	5703	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000534172.1	CSMD3-011	2486	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000492692.1	CSMD3-008	1830	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000497026.1	CSMD3-003	1406	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000462254.1	CSMD3-009	457	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 71, Coding exons: 71, Transcript length: 13,212 bps, Translation length: 3,707 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q7Z407

CCDS

This transcript is a member of the Human CCDS set: CCDS6315

Version

ENST00000297405.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000347141 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000297405.5 CSMD3-001

Summary