Transcript: ENST00000394686.3 SGMS2-003

Description

sphingomyelin synthase 2 [Source:HGNC Symbol;Acc:28395]

Gene Synonyms

MGC26963, SMS2

Location

Chromosome 4: 108,814,430-108,832,109 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 10 domains and features, is associated with 6713 variant alleles and maps to 323 oligo probes.

Gene

This transcript is a product of gene ENSG00000164023.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000394684.4	SGMS2-001	6149	365aa	ENSP00000378176.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3677	E5RGG5 E5RJ63 E5RJU3 Q8NHU3	NM_001136258.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000394686.3	SGMS2-003	2127	365aa	ENSP00000378178.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3677	E5RGG5 E5RJ63 E5RJU3 Q8NHU3	NM_152621.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000359079.4	SGMS2-002	1887	365aa	ENSP00000351981.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3677	E5RGG5 E5RJ63 E5RJU3 Q8NHU3	NM_001136257.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000503385.1	SGMS2-010	581	44aa	ENSP00000430172.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RGG5 E5RJ63	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000506993.1	SGMS2-009	570	34aa	ENSP00000428294.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RJ63	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000503862.1	SGMS2-006	567	125aa	ENSP00000428176.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RJU3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000506462.1	SGMS2-007	582	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000515332.1	SGMS2-008	498	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000504754.1	SGMS2-011	459	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 2,127 bps, Translation length: 365 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8NHU3

CCDS

This transcript is a member of the Human CCDS set: CCDS3677

Version

ENST00000394686.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000254754 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000394686.3 SGMS2-003

Summary