Transcript: ENST00000296327.5 SLC51A-001

Description

solute carrier family 51, alpha subunit [Source:HGNC Symbol;Acc:29955]

Gene Synonyms

OSTA, OSTalpha

Location

Chromosome 3: 195,943,375-195,960,301 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 13 domains and features, is associated with 8321 variant alleles and maps to 401 oligo probes.

Gene

This transcript is a product of gene ENSG00000163959.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000296327.5	SLC51A-001	1463	340aa	ENSP00000296327.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3314	Q86UW1	NM_152672.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000415111.1	SLC51A-010	742	23aa	ENSP00000409560.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C351	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000428985.1	SLC51A-007	636	212aa	ENSP00000413951.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000416660.1	SLC51A-005	572	66aa	ENSP00000405414.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J2I5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000442203.1	SLC51A-006	568	58aa	ENSP00000391172.1	Nonsense mediated decay		F8WBV2	-	-
ENST00000479732.1	SLC51A-014	823	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496737.1	SLC51A-011	677	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000475672.1	SLC51A-003	1208	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000484407.1	SLC51A-004	1066	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000472653.1	SLC51A-002	912	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000475271.1	SLC51A-009	766	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000476129.1	SLC51A-008	565	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000492794.1	SLC51A-013	482	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000471430.1	SLC51A-012	449	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,463 bps, Translation length: 340 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q86UW1

CCDS

This transcript is a member of the Human CCDS set: CCDS3314

Version

ENST00000296327.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000341253 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000296327.5 SLC51A-001

Summary