Transcript: ENST00000296137.2 FYCO1-001

Description

FYVE and coiled-coil domain containing 1 [Source:HGNC Symbol;Acc:14673]

Gene Synonyms

CATC2, CTRCT18, FLJ13335, RUFY3, ZFYVE7

Location

About this transcript

This transcript has 18 exons, is annotated with 36 domains and features, is associated with 30686 variant alleles and maps to 695 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000296137.2	FYCO1-001	8504	1478aa	ENSP00000296137.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2734	C9J2W6 Q9BQS8	NM_024513.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000535325.1	FYCO1-201	4635	1498aa	ENSP00000441178.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7ZKT7 C9J2W6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000433878.1	FYCO1-003	4317	267aa	ENSP00000388136.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J2W6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000438446.1	FYCO1-006	1072	149aa	ENSP00000398517.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J2W6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000471739.1	FYCO1-005	545	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 18, Coding exons: 17, Transcript length: 8,504 bps, Translation length: 1,478 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9BQS8

CCDS

This transcript is a member of the Human CCDS set: CCDS2734

Version

ENST00000296137.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000257320 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.