Transcript: ENST00000473146.1 SLC6A20-004

Description

solute carrier family 6 (proline IMINO transporter), member 20 [Source:HGNC Symbol;Acc:30927]

Gene Synonyms

SIT1, XT3, XTRP3, Xtrp3

Location

Chromosome 3: 45,799,996-45,813,831 reverse strand.

About this transcript

This transcript has 6 exons, is associated with 6027 variant alleles and maps to 273 oligo probes.

Gene

This transcript is a product of gene ENSG00000163817.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000358525.4	SLC6A20-001	5423	592aa	ENSP00000346298.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43077	Q9NP91	NM_020208.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000353278.4	SLC6A20-002	5247	555aa	ENSP00000296133.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2730	Q9NP91	NM_022405.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000456124.2	SLC6A20-201	2662	547aa	ENSP00000404310.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7ZLW4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000413781.1	SLC6A20-007	910	264aa	ENSP00000395506.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JIN6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000493980.1	SLC6A20-005	437	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000470226.1	SLC6A20-006	380	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000473146.1	SLC6A20-004	2441	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 2,441 bps,

Version

ENST00000473146.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000345232 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000473146.1 SLC6A20-004

Summary