Transcript: ENST00000358525.4 SLC6A20-001

Description

solute carrier family 6 (proline IMINO transporter), member 20 [Source:HGNC Symbol;Acc:30927]

Gene Synonyms

SIT1, XT3, XTRP3, Xtrp3

Location

Chromosome 3: 45,796,942-45,838,027 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 35 domains and features, is associated with 17597 variant alleles and maps to 527 oligo probes.

Gene

This transcript is a product of gene ENSG00000163817.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000358525.4	SLC6A20-001	5423	592aa	ENSP00000346298.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43077	Q9NP91	NM_020208.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000353278.4	SLC6A20-002	5247	555aa	ENSP00000296133.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2730	Q9NP91	NM_022405.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000456124.2	SLC6A20-201	2662	547aa	ENSP00000404310.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7ZLW4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000413781.1	SLC6A20-007	910	264aa	ENSP00000395506.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JIN6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000493980.1	SLC6A20-005	437	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000470226.1	SLC6A20-006	380	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000473146.1	SLC6A20-004	2441	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 5,423 bps, Translation length: 592 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NP91

CCDS

This transcript is a member of the Human CCDS set: CCDS43077

Version

ENST00000358525.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000257318 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000358525.4 SLC6A20-001

Summary