Transcript: ENST00000402989.1 SMC6-006

Description

structural maintenance of chromosomes 6 [Source:HGNC Symbol;Acc:20466]

Gene Synonyms

FLJ22116, SMC-6, SMC6L1, hSMC6

Location

Chromosome 2: 17,846,714-17,981,462 reverse strand.

About this transcript

This transcript has 30 exons, is annotated with 17 domains and features, is associated with 59236 variant alleles and maps to 659 oligo probes.

Gene

This transcript is a product of gene ENSG00000163029.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000448223.2	SMC6-002	5233	1091aa	ENSP00000404092.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1690	C9JEF0 Q96SB8	NM_001142286.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000351948.4	SMC6-001	5173	1091aa	ENSP00000323439.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1690	C9JEF0 Q96SB8	NM_024624.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000402989.1	SMC6-006	3729	1091aa	ENSP00000384539.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1690	C9JEF0 Q96SB8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381272.4	SMC6-201	3724	1117aa	ENSP00000370672.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JEF0 C9JMN1 Q96SB8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000446852.1	SMC6-003	2460	740aa	ENSP00000408644.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JEF0 C9JMN1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000428868.1	SMC6-007	544	57aa	ENSP00000415352.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JEF0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000430591.1	SMC6-005	480	22aa	ENSP00000412246.1	Nonsense mediated decay		H7C3J8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000489535.1	SMC6-008	586	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000481708.1	SMC6-004	3897	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 30, Coding exons: 26, Transcript length: 3,729 bps, Translation length: 1,091 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96SB8

CCDS

This transcript is a member of the Human CCDS set: CCDS1690

Version

ENST00000402989.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000323814 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000402989.1 SMC6-006

Summary