Transcript: ENST00000295006.5 CAPN2-001

Description

calpain 2, (m/II) large subunit [Source:HGNC Symbol;Acc:1479]

Gene Synonyms

CANP2, CANPL2, CANPml, mCANP

Location

Chromosome 1: 223,900,034-223,963,720 forward strand.

About this transcript

This transcript has 21 exons, is annotated with 32 domains and features, is associated with 27309 variant alleles and maps to 717 oligo probes.

Gene

This transcript is a product of gene ENSG00000162909.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000295006.5	CAPN2-001	3573	700aa	ENSP00000295006.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31035	P17655	NM_001748.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000433674.2	CAPN2-201	3264	622aa	ENSP00000413158.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53478	C9JWY7 P17655	NM_001146068.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000434648.1	CAPN2-009	577	131aa	ENSP00000399949.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JWY7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000474026.1	CAPN2-002	4130	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000487223.1	CAPN2-003	2991	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000463997.1	CAPN2-005	2547	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000498027.1	CAPN2-004	1405	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000472601.1	CAPN2-008	625	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000492664.1	CAPN2-007	590	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000480581.1	CAPN2-006	513	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000483579.1	CAPN2-010	496	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000492565.1	CAPN2-011	331	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 21, Coding exons: 21, Transcript length: 3,573 bps, Translation length: 700 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P17655

CCDS

This transcript is a member of the Human CCDS set: CCDS31035

Version

ENST00000295006.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Stop codons

This transcript has a variant, rs17599, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HapMap-YRI, CSHL-HAPMAP:HAPMAP-LWK, CSHL-HAPMAP:HAPMAP-MKK, CSHL-HAPMAP:HAPMAP-CHD, CSHL-HAPMAP:HapMap-JPT, CSHL-HAPMAP:HAPMAP-ASW, CSHL-HAPMAP:HAPMAP-CHB, CSHL-HAPMAP:HapMap-CEU, CSHL-HAPMAP:HAPMAP-TSI, CSHL-HAPMAP:HAPMAP-GIH, CSHL-HAPMAP:HAPMAP-MEX, CSHL-HAPMAP:HapMap-HCB.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000090973 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000295006.5 CAPN2-001

Summary