Transcript: ENST00000435631.2 ITGA5-002

Description

integrin, alpha 5 (fibronectin receptor, alpha polypeptide) [Source:HGNC Symbol;Acc:6141]

Gene Synonyms

CD49e, FNRA, VLA5A

Location

Chromosome 12: 54,798,555-54,813,004 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 3 domains and features, is associated with 6162 variant alleles and maps to 279 oligo probes.

Gene

This transcript is a product of gene ENSG00000161638.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000293379.4	ITGA5-001	4444	1049aa	ENSP00000293379.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8880	P08648	NM_002205.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000547197.1	ITGA5-012	757	119aa	ENSP00000450267.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000435631.2	ITGA5-002	1240	137aa	ENSP00000405865.2	Nonsense mediated decay		B4E3F4	-	-
ENST00000553071.1	ITGA5-003	1013	120aa	ENSP00000447347.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000547744.1	ITGA5-005	547	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000552564.1	ITGA5-004	4996	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000552387.1	ITGA5-013	1333	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000552431.1	ITGA5-011	588	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000550141.1	ITGA5-007	582	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000552583.1	ITGA5-009	568	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000551861.1	ITGA5-006	536	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000549601.1	ITGA5-010	505	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000551564.1	ITGA5-008	354	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 3, Transcript length: 1,240 bps, Translation length: 137 residues

Version

ENST00000435631.2

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000406183 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000435631.2 ITGA5-002

Summary