Transcript: ENST00000552564.1 ITGA5-004

Description

integrin, alpha 5 (fibronectin receptor, alpha polypeptide) [Source:HGNC Symbol;Acc:6141]

Gene Synonyms

CD49e, FNRA, VLA5A

Location

Chromosome 12: 54,789,045-54,799,900 reverse strand.

About this transcript

This transcript has 17 exons, is associated with 4774 variant alleles and maps to 628 oligo probes.

Gene

This transcript is a product of gene ENSG00000161638.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000293379.4	ITGA5-001	4444	1049aa	ENSP00000293379.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8880	P08648	NM_002205.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000547197.1	ITGA5-012	757	119aa	ENSP00000450267.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000435631.2	ITGA5-002	1240	137aa	ENSP00000405865.2	Nonsense mediated decay		B4E3F4	-	-
ENST00000553071.1	ITGA5-003	1013	120aa	ENSP00000447347.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000547744.1	ITGA5-005	547	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000552564.1	ITGA5-004	4996	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000552387.1	ITGA5-013	1333	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000552431.1	ITGA5-011	588	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000550141.1	ITGA5-007	582	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000552583.1	ITGA5-009	568	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000551861.1	ITGA5-006	536	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000549601.1	ITGA5-010	505	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000551564.1	ITGA5-008	354	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 0, Transcript length: 4,996 bps,

Version

ENST00000552564.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000406173 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000552564.1 ITGA5-004

Summary