Transcript: ENST00000367990.3 APOA2-001

Description

apolipoprotein A-II [Source:HGNC Symbol;Acc:601]

Gene Synonyms

Apo-AII, ApoA-II, apoAII

Location

Chromosome 1: 161,192,082-161,193,418 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 5 domains and features, is associated with 850 variant alleles and maps to 326 oligo probes.

Gene

This transcript is a product of gene ENSG00000158874.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000464492.1	APOA2-008	530	133aa	ENSP00000476911.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000367990.3	APOA2-001	474	100aa	ENSP00000356969.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1226	P02652	NM_001643.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000463273.1	APOA2-010	469	95aa	ENSP00000476740.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000468465.1	APOA2-004	421	52aa	ENSP00000476662.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000470459.2	APOA2-007	416	82aa	ENSP00000477031.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000463812.1	APOA2-005	401	52aa	ENSP00000476890.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000469730.2	APOA2-009	265	66aa	ENSP00000476605.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000491350.1	APOA2-002	263	27aa	ENSP00000477353.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q76EI7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000481511.1	APOA2-006	655	72aa	ENSP00000477054.1	Nonsense mediated decay		D3DVG8	-	-
ENST00000481413.1	APOA2-003	927	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 474 bps, Translation length: 100 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P02652

CCDS

This transcript is a member of the Human CCDS set: CCDS1226

Version

ENST00000367990.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000083037 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000367990.3 APOA2-001

Summary