Transcript: ENST00000475309.1 WIPI2-004

Description

WD repeat domain, phosphoinositide interacting 2 [Source:HGNC Symbol;Acc:32225]

Gene Synonyms

ATG18B, Atg21, CGI-50, DKFZP434J154, DKFZp686P02188, FLJ12979, FLJ14217, FLJ42984, WIPI-2

Location

Chromosome 7: 5,253,817-5,258,662 forward strand.

About this transcript

This transcript has 3 exons, is associated with 2686 variant alleles and maps to 225 oligo probes.

Gene

This transcript is a product of gene ENSG00000157954.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000288828.4	WIPI2-001	4476	454aa	ENSP00000288828.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5339	Q9Y4P8	NM_015610.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000401525.3	WIPI2-002	2112	436aa	ENSP00000384945.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34593	Q9Y4P8	NM_016003.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000382384.2	WIPI2-007	1948	425aa	ENSP00000371821.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47532	Q9Y4P8	NM_001033519.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000404704.3	WIPI2-008	1663	443aa	ENSP00000385297.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47531	Q9Y4P8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000484262.1	WIPI2-005	1504	384aa	ENSP00000429654.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47533	Q9Y4P8	NM_001033520.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000485854.1	WIPI2-010	773	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496867.1	WIPI2-009	745	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000488359.1	WIPI2-012	602	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000480238.1	WIPI2-011	470	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000475309.1	WIPI2-004	2558	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000471851.1	WIPI2-006	2523	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000466014.1	WIPI2-003	1700	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000479690.1	WIPI2-013	824	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465102.1	WIPI2-014	643	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 2,558 bps,

Version

ENST00000475309.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000323973 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000475309.1 WIPI2-004

Summary