Transcript: ENST00000528313.1 MS4A1-003

Description

membrane-spanning 4-domains, subfamily A, member 1 [Source:HGNC Symbol;Acc:7315]

Gene Synonyms

B1, Bp35, CD20, CVID5, LEU-16, MS4A2, S7

Location

Chromosome 11: 60,223,324-60,236,365 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 4 domains and features, is associated with 6016 variant alleles and maps to 320 oligo probes.

Gene

This transcript is a product of gene ENSG00000156738.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000534668.1	MS4A1-001	3475	297aa	ENSP00000433277.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31570	P11836	NM_152866.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000389939.2	MS4A1-202	3372	297aa	ENSP00000374589.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31570	P11836	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000345732.4	MS4A1-201	3331	297aa	ENSP00000314620.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31570	P11836	NM_021950.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000532073.1	MS4A1-002	2560	284aa	ENSP00000433519.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PKH8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000528313.1	MS4A1-003	928	130aa	ENSP00000432270.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DT24	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000533306.1	MS4A1-006	607	123aa	ENSP00000437002.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PPL6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000532491.1	MS4A1-008	558	6aa	ENSP00000432219.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000524807.1	MS4A1-007	495	7aa	ENSP00000433179.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P11836	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000534503.1	MS4A1-004	933	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000527101.1	MS4A1-005	582	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000532418.1	MS4A1-009	582	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000530482.1	MS4A1-010	484	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 928 bps, Translation length: 130 residues

Version

ENST00000528313.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000395403 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000528313.1 MS4A1-003

Summary