Transcript: ENST00000528295.1 THY1-008

Description

Thy-1 cell surface antigen [Source:HGNC Symbol;Acc:11801]

Gene Synonyms

CD90

Location

Chromosome 11: 119,289,783-119,293,882 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 2 domains and features, is associated with 1944 variant alleles and maps to 313 oligo probes.

Gene

This transcript is a product of gene ENSG00000154096.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000284240.5	THY1-001	3554	161aa	ENSP00000284240.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8424	B0YJA4 E9PIM6 P04216	NM_006288.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000528522.1	THY1-002	2050	161aa	ENSP00000431301.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8424	B0YJA4 E9PIM6 P04216	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000524970.1	THY1-009	581	165aa	ENSP00000432808.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PNQ8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000580275.1	THY1-011	578	144aa	ENSP00000464248.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QRJ3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000524659.1	THY1-004	570	152aa	ENSP00000435753.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PIM6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000528295.1	THY1-008	897	37aa	ENSP00000432051.1	Nonsense mediated decay		E9PIE1	-	-
ENST00000527590.1	THY1-005	609	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000584021.1	THY1-010	2427	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000533840.1	THY1-006	610	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000532974.1	THY1-007	602	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 897 bps, Translation length: 37 residues

Version

ENST00000528295.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000388373 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000528295.1 THY1-008

Summary