Transcript: ENST00000284240.5 THY1-001

Description

Thy-1 cell surface antigen [Source:HGNC Symbol;Acc:11801]

Gene Synonyms

CD90

Location

Chromosome 11: 119,288,090-119,294,838 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 9 domains and features, is associated with 3208 variant alleles and maps to 560 oligo probes.

Gene

This transcript is a product of gene ENSG00000154096.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000284240.5	THY1-001	3554	161aa	ENSP00000284240.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8424	B0YJA4 E9PIM6 P04216	NM_006288.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000528522.1	THY1-002	2050	161aa	ENSP00000431301.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8424	B0YJA4 E9PIM6 P04216	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000524970.1	THY1-009	581	165aa	ENSP00000432808.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PNQ8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000580275.1	THY1-011	578	144aa	ENSP00000464248.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QRJ3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000524659.1	THY1-004	570	152aa	ENSP00000435753.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PIM6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000528295.1	THY1-008	897	37aa	ENSP00000432051.1	Nonsense mediated decay		E9PIE1	-	-
ENST00000527590.1	THY1-005	609	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000584021.1	THY1-010	2427	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000533840.1	THY1-006	610	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000532974.1	THY1-007	602	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 3,554 bps, Translation length: 161 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P04216

CCDS

This transcript is a member of the Human CCDS set: CCDS8424

Version

ENST00000284240.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000388370 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000284240.5 THY1-001

Summary