Transcript: ENST00000440431.2 SCN3A-004

Description

sodium channel, voltage-gated, type III, alpha subunit [Source:HGNC Symbol;Acc:10590]

Gene Synonyms

KIAA1356, NAC3, Nav1.3

Location

Chromosome 2: 165,953,762-166,043,064 reverse strand.

About this transcript

This transcript has 22 exons, is annotated with 41 domains and features, is associated with 36111 variant alleles and maps to 450 oligo probes.

Gene

This transcript is a product of gene ENSG00000153253.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000360093.3	SCN3A-201	9123	2000aa	ENSP00000353206.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JBM7 F5H4V8 Q9GZM4 Q9NY46	NM_001081677.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000283254.7	SCN3A-001	9091	2000aa	ENSP00000283254.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33312	C9JBM7 F5H4V8 Q9NY46	NM_006922.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409101.3	SCN3A-002	6599	1951aa	ENSP00000386726.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46440	C9JBM7 F5H4V8 Q9GZM4 Q9NY46	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000440431.2	SCN3A-004	4146	1364aa	ENSP00000403348.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JBM7 E7EUE6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000540861.1	SCN3A-202	1908	483aa	ENSP00000439920.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H4V8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000453007.1	SCN3A-003	1216	200aa	ENSP00000391569.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JBM7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000465043.1	SCN3A-007	531	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000484898.1	SCN3A-008	262	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471697.1	SCN3A-006	555	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 22, Coding exons: 21, Transcript length: 4,146 bps, Translation length: 1,364 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000440431.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000102658 (version 4)

Favourite species

All species

Recent locations

Transcript: ENST00000440431.2 SCN3A-004

Summary