Transcript: ENST00000453007.1 SCN3A-003

Description

sodium channel, voltage-gated, type III, alpha subunit [Source:HGNC Symbol;Acc:10590]

Gene Synonyms

KIAA1356, NAC3, Nav1.3

Location

Chromosome 2: 166,020,903-166,060,560 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 9 domains and features, is associated with 15205 variant alleles and maps to 228 oligo probes.

Gene

This transcript is a product of gene ENSG00000153253.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000360093.3	SCN3A-201	9123	2000aa	ENSP00000353206.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JBM7 F5H4V8 Q9GZM4 Q9NY46	NM_001081677.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000283254.7	SCN3A-001	9091	2000aa	ENSP00000283254.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33312	C9JBM7 F5H4V8 Q9NY46	NM_006922.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409101.3	SCN3A-002	6599	1951aa	ENSP00000386726.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46440	C9JBM7 F5H4V8 Q9GZM4 Q9NY46	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000440431.2	SCN3A-004	4146	1364aa	ENSP00000403348.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JBM7 E7EUE6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000540861.1	SCN3A-202	1908	483aa	ENSP00000439920.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H4V8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000453007.1	SCN3A-003	1216	200aa	ENSP00000391569.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JBM7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000465043.1	SCN3A-007	531	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000484898.1	SCN3A-008	262	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471697.1	SCN3A-006	555	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 4, Transcript length: 1,216 bps, Translation length: 200 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000453007.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000102657 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000453007.1 SCN3A-003

Summary