Transcript: ENST00000277480.2 LCN2-001

Description

lipocalin 2 [Source:HGNC Symbol;Acc:6526]

Gene Synonyms

24p3, HNL, MSFI, NGAL

Location

Chromosome 9: 130,911,732-130,915,734 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 18 domains and features, is associated with 2205 variant alleles and maps to 285 oligo probes.

Gene

This transcript is a product of gene ENSG00000148346.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000540948.1	LCN2-202	1109	198aa	ENSP00000441666.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P80188	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000373017.1	LCN2-003	848	198aa	ENSP00000362108.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6892	P80188	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000373013.2	LCN2-201	828	200aa	ENSP00000362104.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H9KV70	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000277480.2	LCN2-001	822	198aa	ENSP00000277480.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6892	P80188	NM_005564.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000372998.1	LCN2-002	631	200aa	ENSP00000362089.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000470902.1	LCN2-004	877	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000494317.1	LCN2-006	625	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000488391.1	LCN2-005	485	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000487719.1	LCN2-007	427	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 822 bps, Translation length: 198 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P80188

CCDS

This transcript is a member of the Human CCDS set: CCDS6892

Version

ENST00000277480.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000054373 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000277480.2 LCN2-001

Summary