Transcript: ENST00000540948.1 LCN2-202

Description

lipocalin 2 [Source:HGNC Symbol;Acc:6526]

Gene Synonyms

24p3, HNL, MSFI, NGAL

Location

Chromosome 9: 130,911,732-130,915,022 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 18 domains and features, is associated with 1846 variant alleles and maps to 260 oligo probes.

Gene

This transcript is a product of gene ENSG00000148346.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000540948.1	LCN2-202	1109	198aa	ENSP00000441666.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P80188	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000373017.1	LCN2-003	848	198aa	ENSP00000362108.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6892	P80188	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000373013.2	LCN2-201	828	200aa	ENSP00000362104.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H9KV70	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000277480.2	LCN2-001	822	198aa	ENSP00000277480.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6892	P80188	NM_005564.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000372998.1	LCN2-002	631	200aa	ENSP00000362089.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000470902.1	LCN2-004	877	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000494317.1	LCN2-006	625	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000488391.1	LCN2-005	485	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000487719.1	LCN2-007	427	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,109 bps, Translation length: 198 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P80188

Version

ENST00000540948.1

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000540948.1 LCN2-202

Summary