Transcript: ENST00000379997.3 C9orf72-003

Description

chromosome 9 open reading frame 72 [Source:HGNC Symbol;Acc:28337]

Gene Synonyms

ALSFTD, FTDALS, MGC23980

Location

About this transcript

This transcript has 5 exons, is annotated with 3 domains and features, is associated with 6738 variant alleles and maps to 246 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000380003.3	C9orf72-001	3200	481aa	ENSP00000369339.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6522	Q96LT7 Q9NUW0	NM_018325.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000379997.3	C9orf72-003	1873	222aa	ENSP00000369333.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6523	Q96LT7	NM_145005.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000379995.1	C9orf72-005	777	222aa	ENSP00000369331.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6523	Q96LT7	-	-
ENST00000488117.1	C9orf72-002	4808	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461679.1	C9orf72-004	862	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 1,873 bps, Translation length: 222 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96LT7

CCDS

This transcript is a member of the Human CCDS set: CCDS6523

Version

ENST00000379997.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000051971 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.