Transcript: ENST00000261037.3 COL8A1-001

Description

collagen, type VIII, alpha 1 [Source:HGNC Symbol;Acc:2215]

Gene Synonyms

C3orf7, MGC9568

Location

Chromosome 3: 99,357,319-99,518,070 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 25 domains and features, is associated with 68933 variant alleles and maps to 440 oligo probes.

Gene

This transcript is a product of gene ENSG00000144810.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000261037.3	COL8A1-001	5705	744aa	ENSP00000261037.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2934	C9JTN9 P27658	NM_001850.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000273342.4	COL8A1-201	2596	744aa	ENSP00000273342.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2934	C9JTN9 P27658	NM_020351.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000452013.1	COL8A1-003	659	113aa	ENSP00000387589.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JTN9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000463753.1	COL8A1-002	2964	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000474648.1	COL8A1-005	841	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000483969.1	COL8A1-004	832	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000462604.1	COL8A1-006	190	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 2, Transcript length: 5,705 bps, Translation length: 744 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P27658

CCDS

This transcript is a member of the Human CCDS set: CCDS2934

Version

ENST00000261037.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000309001 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000261037.3 COL8A1-001

Summary