Transcript: ENST00000264741.5 ITGA9-001

Description

integrin, alpha 9 [Source:HGNC Symbol;Acc:6145]

Gene Synonyms

ALPHA-RLC, ITGA4L, RLC

Location

About this transcript

This transcript has 28 exons, is annotated with 40 domains and features, is associated with 150597 variant alleles and maps to 920 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264741.5	ITGA9-001	7889	1035aa	ENSP00000264741.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2669	Q13797	NM_002207.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000422441.1	ITGA9-002	2282	632aa	ENSP00000397258.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PDS3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000411817.2	ITGA9-004	609	69aa	ENSP00000406533.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000461533.1	ITGA9-003	428	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 28, Coding exons: 28, Transcript length: 7,889 bps, Translation length: 1,035 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q13797

CCDS

This transcript is a member of the Human CCDS set: CCDS2669

Version

ENST00000264741.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000253361 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.