Transcript: ENST00000461533.1 ITGA9-003

Description

integrin, alpha 9 [Source:HGNC Symbol;Acc:6145]

Gene Synonyms

ALPHA-RLC, ITGA4L, RLC

Location

About this transcript

This transcript has 2 exons, is associated with 20088 variant alleles and maps to 58 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264741.5	ITGA9-001	7889	1035aa	ENSP00000264741.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2669	Q13797	NM_002207.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000422441.1	ITGA9-002	2282	632aa	ENSP00000397258.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PDS3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000411817.2	ITGA9-004	609	69aa	ENSP00000406533.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000461533.1	ITGA9-003	428	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 428 bps,

Version

ENST00000461533.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000342361 (version 1)