Transcript: ENST00000389793.2 LYST-201

Description

lysosomal trafficking regulator [Source:HGNC Symbol;Acc:1968]

Gene Synonyms

CHS, CHS1

Location

Chromosome 1: 235,824,350-236,030,220 reverse strand.

About this transcript

This transcript has 53 exons, is annotated with 34 domains and features, is associated with 82444 variant alleles and maps to 1382 oligo probes.

Gene

This transcript is a product of gene ENSG00000143669.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000389794.3	LYST-001	13480	3801aa	ENSP00000374444.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31062	Q99698	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000389793.2	LYST-201	13471	3801aa	ENSP00000374443.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31062	Q99698	NM_000081.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000536965.1	LYST-202	6650	1382aa	ENSP00000438315.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H074	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000487530.1	LYST-011	542	181aa	ENSP00000417168.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000473037.1	LYST-008	8293	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489585.1	LYST-002	7069	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000465349.1	LYST-003	5220	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468626.2	LYST-005	1140	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468107.1	LYST-004	951	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461526.1	LYST-007	866	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000475277.1	LYST-010	718	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000492844.1	LYST-006	452	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000462376.1	LYST-012	547	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 53, Coding exons: 51, Transcript length: 13,471 bps, Translation length: 3,801 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q99698

CCDS

This transcript is a member of the Human CCDS set: CCDS31062

Version

ENST00000389793.2

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript having same CDS:	OTTHUMT00000097533 (version 5)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000389793.2 LYST-201

Summary