Transcript: ENST00000465349.1 LYST-003

Description

lysosomal trafficking regulator [Source:HGNC Symbol;Acc:1968]

Gene Synonyms

CHS, CHS1

Location

Chromosome 1: 235,954,873-236,046,940 reverse strand.

About this transcript

This transcript has 12 exons, is associated with 37232 variant alleles and maps to 374 oligo probes.

Gene

This transcript is a product of gene ENSG00000143669.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000389794.3	LYST-001	13480	3801aa	ENSP00000374444.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31062	Q99698	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000389793.2	LYST-201	13471	3801aa	ENSP00000374443.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31062	Q99698	NM_000081.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000536965.1	LYST-202	6650	1382aa	ENSP00000438315.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H074	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000487530.1	LYST-011	542	181aa	ENSP00000417168.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000473037.1	LYST-008	8293	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489585.1	LYST-002	7069	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000465349.1	LYST-003	5220	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468626.2	LYST-005	1140	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468107.1	LYST-004	951	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461526.1	LYST-007	866	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000475277.1	LYST-010	718	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000492844.1	LYST-006	452	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000462376.1	LYST-012	547	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 0, Transcript length: 5,220 bps,

Version

ENST00000465349.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000097535 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000465349.1 LYST-003

Summary