Transcript: ENST00000268638.5 IRF8-001

Description

interferon regulatory factor 8 [Source:HGNC Symbol;Acc:5358]

Gene Synonyms

H-ICSBP, ICSBP, ICSBP1, IRF-8

Location

Chromosome 16: 85,932,409-85,956,215 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 15 domains and features, is associated with 13623 variant alleles and maps to 467 oligo probes.

Gene

This transcript is a product of gene ENSG00000140968.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000268638.5	IRF8-001	3030	426aa	ENSP00000268638.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10956	H3BPS5 H3BQH6 H3BQK3 H3BRT4 H3BT31 Q02556	NM_002163.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000566369.1	IRF8-003	1582	152aa	ENSP00000455048.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000563180.1	IRF8-002	1394	126aa	ENSP00000458047.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BQK3 H3BVC2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000564803.1	IRF8-006	1038	328aa	ENSP00000456992.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BQH6 H3BQK3 H3BT31	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000562492.1	IRF8-009	946	222aa	ENSP00000455452.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BPS5 H3BRT4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000569607.1	IRF8-010	880	220aa	ENSP00000456395.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BRT4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000564617.1	IRF8-011	531	159aa	ENSP00000455784.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BQH6 H3BQK3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000565552.1	IRF8-004	522	47aa	ENSP00000455816.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BQK3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000569145.1	IRF8-008	289	14aa	ENSP00000455760.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000570088.1	IRF8-005	553	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000564056.1	IRF8-007	514	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 3,030 bps, Translation length: 426 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q02556

CCDS

This transcript is a member of the Human CCDS set: CCDS10956

Version

ENST00000268638.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000269100 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000268638.5 IRF8-001

Summary