Transcript: ENST00000564844.1 MAP1LC3B-003

Description

microtubule-associated protein 1 light chain 3 beta [Source:HGNC Symbol;Acc:13352]

Gene Synonyms

ATG8F, LC3B, MAP1A/1BLC3, MAP1ALC3, MAP1LC3B-a

Location

Chromosome 16: 87,425,950-87,438,385 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 1 domain and feature, is associated with 7641 variant alleles and maps to 478 oligo probes.

Gene

This transcript is a product of gene ENSG00000140941.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000268607.5	MAP1LC3B-001	2688	125aa	ENSP00000268607.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10960	H6UMI0 Q49A36 Q658J6 Q9GZQ8	NM_022818.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000534986.1	MAP1LC3B-201	2618	66aa	ENSP00000441125.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q49A36	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000565788.1	MAP1LC3B-005	625	75aa	ENSP00000457225.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BTL1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000564844.1	MAP1LC3B-003	3085	68aa	ENSP00000454293.1	Nonsense mediated decay		H3BM99	-	-
ENST00000570189.1	MAP1LC3B-002	1259	47aa	ENSP00000457141.1	Nonsense mediated decay		H3BTE7	-	-
ENST00000562778.1	MAP1LC3B-006	560	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000561823.1	MAP1LC3B-007	456	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000563720.1	MAP1LC3B-008	287	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000599768.1	MAP1LC3B-009	212	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000564638.1	MAP1LC3B-004	735	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 1, Transcript length: 3,085 bps, Translation length: 68 residues

Version

ENST00000564844.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000430812 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000564844.1 MAP1LC3B-003

Summary