Transcript: ENST00000268607.5 MAP1LC3B-001

Description

microtubule-associated protein 1 light chain 3 beta [Source:HGNC Symbol;Acc:13352]

Gene Synonyms

ATG8F, LC3B, MAP1A/1BLC3, MAP1ALC3, MAP1LC3B-a

Location

Chromosome 16: 87,425,406-87,438,385 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 5 domains and features, is associated with 8153 variant alleles and maps to 461 oligo probes.

Gene

This transcript is a product of gene ENSG00000140941.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000268607.5	MAP1LC3B-001	2688	125aa	ENSP00000268607.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10960	H6UMI0 Q49A36 Q658J6 Q9GZQ8	NM_022818.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000534986.1	MAP1LC3B-201	2618	66aa	ENSP00000441125.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q49A36	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000565788.1	MAP1LC3B-005	625	75aa	ENSP00000457225.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BTL1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000564844.1	MAP1LC3B-003	3085	68aa	ENSP00000454293.1	Nonsense mediated decay		H3BM99	-	-
ENST00000570189.1	MAP1LC3B-002	1259	47aa	ENSP00000457141.1	Nonsense mediated decay		H3BTE7	-	-
ENST00000562778.1	MAP1LC3B-006	560	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000561823.1	MAP1LC3B-007	456	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000563720.1	MAP1LC3B-008	287	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000599768.1	MAP1LC3B-009	212	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000564638.1	MAP1LC3B-004	735	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 2,688 bps, Translation length: 125 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9GZQ8

CCDS

This transcript is a member of the Human CCDS set: CCDS10960

Version

ENST00000268607.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000269106 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000268607.5 MAP1LC3B-001

Summary