Transcript: ENST00000478238.1 SYCP3-005

Description

synaptonemal complex protein 3 [Source:HGNC Symbol;Acc:18130]

Gene Synonyms

COR1, SCP3, SPGF4

Location

About this transcript

This transcript has 2 exons, is associated with 1287 variant alleles and maps to 144 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000392927.3	SYCP3-001	1120	236aa	ENSP00000376658.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9087	Q8IZU3	NM_153694.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000266743.2	SYCP3-002	1068	236aa	ENSP00000266743.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9087	Q8IZU3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000392924.1	SYCP3-003	845	236aa	ENSP00000376655.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9087	Q8IZU3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000478139.1	SYCP3-004	3690	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000478238.1	SYCP3-005	665	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 665 bps,

Version

ENST00000478238.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000316482 (version 1)